Package index • ctSVG

All functions

cellassign(): Assign each square to a cell

ctsvg_fit(): Fit spatial gene expression patterns within each cell cluster

ctsvg_module(): Identify gene modules within each cell cluster

ctsvg_test(): Identify spatially variable genes within each cell cluster

getexpr(): Generate single-cell gene expression profiles

plotGene(): Visualize spatial patterns of a single gene

plotMetagene(): Visualize spatial patterns of metagenes within a cell cluster

recluster(): Reassign cells to clusters

runseurat(): Run Seurat pipeline