Visualize spatial patterns of metagenes within a cell cluster

Visualize spatial patterns of metagenes within a cell cluster

Usage

plotMetagene(clufitRes, coord, sc, moduleRes, cellclu, background = FALSE, ...)

Arguments

clufitRes

The output from ctsvg_fit

coord

The matrix of spatial locations

sc

The named vector of cell cluster assignments

moduleRes

The output from ctsvg_module

cellclu

A character value indicating which cell cluster to plot

background

Whether to plot all cells (FALSE by default)

...

The parameters in the geom_point(...) function

Value

A ggplot2 plot