Run Seurat pipeline

Run Seurat pipeline

Usage

runseurat(
  count,
  min.genes = 300,
  min.cells = 0.01,
  npcs = 10,
  resolution = 1.2
)

Arguments

count

The output from getexpr

min.genes

The minimum number of genes that are expressed in a cell for it to be retained (300 by default)

min.cells

The minimum proportion of cells a gene is expressed in to be retained (0.01 by default)

npcs

Number of PCs to use (10 by default)

resolution

The parameter in the FindClusters function (1.2 by default)

Value

A Seurat object with cell clustering results